scRNA-seq Dataset Repository

+ Show Dataset List

Help:

  • The "Dataset Repository" displays all the dataset information retrieved by specific omics or anatomical regions, including the eye anatomy, omics type, platform, total number of samples and cells, along with the origin database ID and PubMed ID.

  • By clicking on the link under column 'Browse Dataset', users can explore more details about the dataset.

  • The source website and publication for the dataset can be accessed via the link to the original database and PubMed.

Sample Information

"Sample Information" displays clinical information of each sample, including original dataset ID, anatomy, disease name, number of cells, anatomic subdivision, platform, original sample id, gender, age, published papers.

Cell Visualization and Proportion grouped by

"Cell Visualization and Proportion" shows cell proportion and UMAP dimension reduction graph of all the cells grouped by selected characteristic in the dataset.

Cell Types

"Cell Types" presents cell types and cell proportion in the dataset.

Gene Expression of Cell Markers

"Gene Expression of Cell Markers" shows expression of cell type marker genes in the dataset. Circle size represents the cell proportion expressed, and color represents gene expression level.

Expressed Cell Proportion:
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Specifically Expressed Genes of Each Cell Cluster

"Specifically Expressed Genes of Each Cell Cluster" lists all the specifically expressed genes within each cell cluster [adjusted p-value < 0.05, avg log2(fold change)>0.25]。 Information includes cell types, adjusted p-value, avg log2(fold change), expressed cell ratio within the cluster, expressed cell ratio within the remain cells.

Visualization of Gene Expression

"Visualization of Gene Expression" exhibits expression level of inputted genes, distribution of gene expression for each group.

View Expression

Help:

  • "Sample Information" displays clinical information of each sample, including original dataset ID, anatomy, disease name, number of cells, anatomic subdivision, platform, original sample id, geneder, age, published papers.

  • "Cell Visualization and Proportion" shows cell proportion and UMAP dimension reduction graph of all the cells grouped by selected characteristic in the dataset.

  • "Cell Types" presents cell types and cell proportion in the dataset.

  • "Gene Expression of Cell Markers" shows expression of cell type marker genes in the dataset. Circle size represents the cell proportion expressed, and color represents gene expression level.

  • "Specifically Expressed Genes of Each Cell Cluster" lists all the specifically expressed genes within each cell cluster [adjusted p-value < 0.05, avg log2(fold change)>0.25]。 Information includes cell types, adjusted p-value, avg log2(fold change), expressed cell ratio within the cluster, expressed cell ratio within the remain cells.

  • "Visualization of Gene Expression" exhibits expression level of inputted genes, distribution of gene expression for each group.